species:   Bodot
pid:       PID1120
parent:    Bd-milR64
paralog:   
locus:     SACU01000010.1:418265-418350
matures:   ['UAAGAAUUCUAUCGCAUAUCGC', 'AUAUGCUGACAGAUUUCUUUCU']
srr:       SRR8374850
genome:    /Users/jax/+Genomes/Fungal_genomes/Bodot.GCA_011064635.1_ASM1106463v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374850.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Hu2019-my.SRR8374850.cram SACU01000010.1:418265-418350

3 out of bounds
54 alignments
54 proper strand
46 stranded perfect matches

        ************************                     ************************         
GGAAACUAAGUAAGAAUUCUAUCGCAUAUCGCGCAGAUGUAGAGUGUAUCGGUGCAUAUGCUGACAGAUUUCUUUCUGUAGGAAAU
.....(((((.(((((.(((.((((((((.((((.((((.......)))).)))))))))).)).))).))))).)).))).....
----------UAAGAAUUCUAUCGCAUAUCGC------------------------------------------------------ l=22 a=22 c
-------------------------------------------------------AUAUGCUGACAGAUUUCUUUCU--------- l=22 a=0 c*
----------UAAGAAUUCUAUCGCAUAUCGC------------------------------------------------------ l=22 a=22 ma
-------------------------------------------------------AUAUGCUGACAGAUUUCUUUCU--------- l=22 a=0 ma*

--------------------------------GCAGAUGUAGAGUGUAUCa----------------------------------- l=19 a=1 
----------UAAGAAUUCUAUCGCAUA---------------------------------------------------------- l=18 a=2 
----------UAAGgAUUCUAUCGCAUAUC-------------------------------------------------------- l=20 a=1 
----------UAAGAAUUCUAUCGCAUAUCG------------------------------------------------------- l=21 a=10 
----------UAAGAAUUCUAUCGCAUAUCGC------------------------------------------------------ l=22 a=22 (c,ma)
----------UAAGAAUUCUAUCGCAUAcCGC------------------------------------------------------ l=22 a=2 
----------UAAGAAUUCUAUCGCAUAUCGu------------------------------------------------------ l=22 a=2 
----------UAAGAAUUCUAUCGCAUAUCGCG----------------------------------------------------- l=23 a=10 
----------UAAGAAUUCUAUCGCAUAUCGCu----------------------------------------------------- l=23 a=1 
----------UAAGAAUUCUAcCGCAUAUCGCG----------------------------------------------------- l=23 a=1 
----------UAAGAAUUCUAUCGCAUAUCGCGC---------------------------------------------------- l=24 a=2 

mb-01011
ax-1011111
ku-01
ss-111111111110
fn-111
